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SRX11490900: GSM5460811: HeLa-TFEB-Flag-siRNA-Control-2; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 43.1M spots, 3.6G bases, 1.3Gb downloads

Submitted by: NCBI (GEO)
Study: The FACT complex facilitates expression of lysosomal and antioxidant genes through binding to TFEB and TFE3 [RNA-seq]
show Abstracthide Abstract
The transcription factors TFEB and TFE3 orchestrate the cellular response to a variety of stressors, including nutrient deprivation, oxidative stress, and pathogens. Here we describe a novel interaction between TFEB/TFE3 and FACT, a heterodimeric histone chaperone consisting of SSRP1 and SPT16 that mediates nucleosome disassembly and assembly, thus facilitating transcription. Extracellular stimuli, such as nutrient deprivation or oxidative stress, induce nuclear translocation and activation of TFEB and TFE3, which then associate with the FACT complex to regulate stress-induced gene transcription. Depletion of FACT does not affect TFEB activation, stability, or binding to the promoter of target genes. In contrast, reduction of FACT levels by siRNA or treatment with the FACT inhibitor curaxin, severely impair induction of numerous antioxidant and lysosomal genes, revealing a crucial role of FACT as a regulator of cellular homeostasis. Furthermore, upregulation of antioxidant genes induced by TFEB over-expression is significantly reduced by curaxin, consistent with a role of FACT as a TFEB transcriptional activator. Together, our data show that chromatin remodeling at the promoter of stress-responsive genes by FACT is important for efficient expression of TFEB/TFE3 targets, thus providing a link between environmental changes, chromatin modifications and transcriptional regulation. Overall design: Analysis of mRNA expression under different stress conditions in HeLa cells depleted of FACT complex.
Sample: HeLa-TFEB-Flag-siRNA-Control-2
SAMN20296627 • SRS9530364 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from cells using the Qiagen RNeasy Mini Kit (Qiagen, cat# 74104). For each sample, 0.5 μg of total RNA was then used in Illumina's TruSeq Stranded mRNA Library kit (Cat# 20020594) for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM5460811
Links:
Runs: 1 run, 43.1M spots, 3.6G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR1518390943,075,5853.6G1.3Gb2022-04-22

ID:
15400167

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